| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atggaag | 7 | ||
| VMR_0490 | mdv2-miR-m15* | 2 | ....... | 8 | 100 |
| VMR_0337 | hsv2-miR-h6 | 2 | ....... | 8 | 100 |
| VMR_0290 | hsv1-miR-h1 | 2 | ....... | 8 | 100 |
| VMR_1019 | rlcv-miR-rl1-28-5p | 1 | _...... | 6 | 85 |
| VMR_1020 | rlcv-miR-rl1-28-5p | 1 | _...... | 6 | 85 |
| VMR_0525 | mdv2-miR-m32* | 7 | ......_ | 2 | 85 |
| VMR_0461 | mdv1-miR-m13 | 3 | ......_ | 8 | 85 |
| VMR_0450 | mcv-miR-m1-5p | 1 | _...... | 6 | 85 |
| VMR_0379 | iltv-miR-i1* | 8 | ......_ | 3 | 85 |
| VMR_0314 | hsv1-miR-h6-5p | 3 | _...... | 8 | 85 |
