| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attccatc | 8 | ||
| VMR_0525 | mdv2-miR-m32* | 1 | ........ | 8 | 100 |
| VMR_0490 | mdv2-miR-m15* | 7 | _....... | 1 | 87 |
| VMR_0379 | iltv-miR-i1* | 2 | ......._ | 8 | 87 |
| VMR_0290 | hsv1-miR-h1 | 7 | _....... | 1 | 87 |
| VMR_1258 | tumv-miR-s74 | 1 | ......c. | 8 | 87 |
| VMR_1248 | tumv-miR-s65 | 2 | __...... | 7 | 75 |
| VMR_1206 | tumv-miR-s27 | 7 | __...... | 2 | 75 |
| VMR_1190 | tumv-miR-s12 | 7 | __...... | 2 | 75 |
| VMR_0977 | rlcv-miR-rl1-17-5p | 7 | __...... | 2 | 75 |
| VMR_0978 | rlcv-miR-rl1-17-5p | 7 | __...... | 2 | 75 |
| VMR_0742 | prv-miR-5-5p | 8 | __...... | 3 | 75 |
| VMR_0737 | prv-miR-5-5p | 7 | __...... | 2 | 75 |
| VMR_0461 | mdv1-miR-m13 | 8 | _......_ | 3 | 75 |
| VMR_0337 | hsv2-miR-h6 | 7 | _......_ | 2 | 75 |
| VMR_0257 | hhv6b-miR-ro6-4* | 8 | __...... | 3 | 75 |
