| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attttct | 7 | ||
| VMR_0123 | ebv-miR-bart2-5p | 2 | ....... | 8 | 100 |
| VMR_0116 | ebv-miR-bart2 | 2 | ....... | 8 | 100 |
| VMR_0519 | mdv2-miR-m28-5p_-2_5 | 1 | _...... | 6 | 85 |
| VMR_0517 | mdv2-miR-m28 | 1 | _...... | 6 | 85 |
| VMR_0497 | mdv2-miR-m18-5p_-1_5 | 2 | _...... | 7 | 85 |
| VMR_0496 | mdv2-miR-m18-5p | 3 | _...... | 8 | 85 |
| VMR_0485 | mdv1-miR-m9-5p | 1 | _...... | 6 | 85 |
| VMR_0468 | mdv1-miR-m3-5p_-1_5 | 7 | ......_ | 2 | 85 |
| VMR_0467 | mdv1-miR-m3-5p | 8 | ......_ | 3 | 85 |
| VMR_0464 | mdv1-miR-m3 | 8 | ......_ | 3 | 85 |
| VMR_0355 | hvt-miR-h13 | 1 | _...... | 6 | 85 |
