| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caaagata | 8 | ||
| VMR_0358 | hvt-miR-h15 | 1 | ........ | 8 | 100 |
| VMR_1003 | rlcv-miR-rl1-2-3p | 7 | _....... | 1 | 87 |
| VMR_1002 | rlcv-miR-rl1-2-3p | 7 | _....... | 1 | 87 |
| VMR_1001 | rlcv-miR-rl1-2-3p | 7 | _....... | 1 | 87 |
| VMR_1000 | rlcv-miR-rl1-2-3p | 7 | _....... | 1 | 87 |
| VMR_0440 | mcmv-miR-m44-1 | 7 | _....... | 1 | 87 |
| VMR_0144 | ebv-miR-bhrf1-2-3p | 7 | _....... | 1 | 87 |
| VMR_0142 | ebv-miR-bhrf1-2 | 7 | _....... | 1 | 87 |
