| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caccacac | 8 | ||
| VMR_1053 | rlcv-miR-rl1-4-3p | 1 | ........ | 8 | 100 |
| VMR_1241 | tumv-miR-s59 | 7 | ......__ | 2 | 75 |
| VMR_1055 | rlcv-miR-rl1-5-3p | 3 | ......__ | 8 | 75 |
| VMR_0986 | rlcv-miR-rl1-19-3p | 3 | ......__ | 8 | 75 |
| VMR_0985 | rlcv-miR-rl1-19-3p | 3 | ......__ | 8 | 75 |
| VMR_0488 | mdv2-miR-m14-5p_-1_5 | 6 | _......_ | 1 | 75 |
| VMR_0487 | mdv2-miR-m14-5p | 6 | _......_ | 1 | 75 |
| VMR_0126 | ebv-miR-bart3-3p | 3 | ......__ | 8 | 75 |
| VMR_0124 | ebv-miR-bart3 | 3 | ......__ | 8 | 75 |
