| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacgaga | 7 | ||
| VMR_0021 | bhv1-miR-b1 | 2 | ....... | 8 | 100 |
| VMR_1302 | wssv-miR76 | 6 | _...... | 1 | 85 |
| VMR_1263 | tumv-miR-s79 | 3 | _...... | 8 | 85 |
| VMR_0431 | mcmv-miR-m108-1* | 2 | ......_ | 7 | 85 |
| VMR_0384 | iltv-miR-i5* | 8 | _...... | 3 | 85 |
