| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacgttcc | 8 | ||
| VMR_0029 | bhv1-miR-b7 | 1 | ........ | 8 | 100 |
| VMR_0439 | mcmv-miR-m23-2* | 8 | ......._ | 2 | 87 |
| VMR_1173 | sgiv-miR-3 | 7 | ......__ | 2 | 75 |
| VMR_0910 | rcmv-miR-r111.2-5 | 1 | ......__ | 6 | 75 |
| VMR_0180 | hbv-miR-b2-3p | 8 | __...... | 3 | 75 |
