| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cactagt | 7 | ||
| VMR_0999 | rlcv-miR-rl1-23-5p | 2 | ....... | 8 | 100 |
| VMR_0999 | rlcv-miR-rl1-23-5p | 8 | _...... | 3 | 85 |
| VMR_0120 | ebv-miR-bart21-5p | 2 | ....... | 8 | 100 |
| VMR_0120 | ebv-miR-bart21-5p | 8 | _...... | 3 | 85 |
| VMR_0219 | hbv-miR-b8-5p | 3 | ......_ | 8 | 85 |
| VMR_0127 | ebv-miR-bart3-5p* | 8 | ......_ | 3 | 85 |
| VMR_0125 | ebv-miR-bart3* | 8 | ......_ | 3 | 85 |
