| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagacccc | 8 | ||
| VMR_0539 | mghv-miR-m1-2-3p | 1 | ........ | 8 | 100 |
| VMR_0304 | hsv1-miR-h27 | 1 | ........ | 8 | 100 |
| VMR_0328 | hsv2-miR-h22 | 8 | _....... | 2 | 87 |
