| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagggttt | 8 | ||
| VMR_1109 | rrv-miR-rr1-3-3p | 1 | ........ | 8 | 100 |
| VMR_1110 | rrv-miR-rr1-3-3p | 1 | _....... | 7 | 87 |
| VMR_1293 | wssv-miR36-5p | 3 | ......__ | 8 | 75 |
| VMR_0794 | prv-miR-8-3p | 7 | _......_ | 2 | 75 |
| VMR_0792 | prv-miR-8-3p | 6 | _......_ | 1 | 75 |
| VMR_0791 | prv-miR-8-3p | 7 | _......_ | 2 | 75 |
| VMR_0790 | prv-miR-8-3p | 7 | _......_ | 2 | 75 |
| VMR_0789 | prv-miR-8-3p | 7 | _......_ | 2 | 75 |
| VMR_0786 | prv-miR-8-3p | 7 | _......_ | 2 | 75 |
| VMR_0784 | prv-miR-8-3p | 7 | _......_ | 2 | 75 |
| VMR_0783 | prv-miR-8-3p | 7 | _......_ | 2 | 75 |
| VMR_0781 | prv-miR-8-3p | 6 | _......_ | 1 | 75 |
| VMR_0056 | bmnpv-miR-2 | 2 | __...... | 7 | 75 |
