| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caggtgg | 7 | ||
| VMR_0918 | rcmv-miR-r1-4 | 2 | ....... | 8 | 100 |
| VMR_0550 | mghv-miR-m1-7-5p | 3 | _...... | 8 | 85 |
| VMR_0097 | ebv-miR-bart10* | 7 | _...... | 2 | 85 |
