| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagtgttg | 8 | ||
| VMR_1096 | rrv-miR-rr1-15-3p | 1 | ........ | 8 | 100 |
| VMR_1095 | rrv-miR-rr1-15-3p | 1 | ........ | 8 | 100 |
| VMR_0522 | mdv2-miR-m30 | 7 | _....... | 1 | 87 |
| VMR_0394 | kshv-miR-k12-10a | 2 | _....... | 8 | 87 |
| VMR_0396 | kshv-miR-k12-10b | 3 | __...... | 8 | 75 |
| VMR_0390 | kshv-miR-k10a_+1_5 | 3 | _......_ | 8 | 75 |
| VMR_0139 | ebv-miR-bart9 | 7 | _......_ | 2 | 75 |
| VMR_0040 | blv-miR-b1-3p | 2 | ......__ | 7 | 75 |
