| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccaccga | 7 | ||
| VMR_1089 | rrv-miR-rr1-1-3p | 2 | ....... | 8 | 100 |
| VMR_1090 | rrv-miR-rr1-1-3p | 3 | ......_ | 8 | 85 |
| VMR_1067 | rrv-miR-rr1-1* | 3 | ......_ | 8 | 85 |
| VMR_0808 | prv-miR-8-5p | 6 | ......_ | 1 | 85 |
| VMR_0758 | prv-miR-7-3p | 2 | ......_ | 7 | 85 |
| VMR_0757 | prv-miR-7-3p | 2 | ......_ | 7 | 85 |
| VMR_0756 | prv-miR-7-3p | 2 | ......_ | 7 | 85 |
| VMR_0754 | prv-miR-7-3p | 2 | ......_ | 7 | 85 |
