| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagaggc | 8 | ||
| VMR_0230 | hcmv-miR-ul69-5p | 1 | ........ | 8 | 100 |
| VMR_1217 | tumv-miR-s37 | 2 | __...... | 7 | 75 |
| VMR_0990 | rlcv-miR-rl1-21-3p | 8 | __...... | 3 | 75 |
| VMR_0260 | hiv1-miR-tar-3p | 7 | ......__ | 2 | 75 |
