| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagcagc | 8 | ||
| VMR_0411 | kshv-miR-k12-6-5p | 1 | ........ | 8 | 100 |
| VMR_1243 | tumv-miR-s60 | 8 | ......__ | 3 | 75 |
| VMR_0449 | mcv-miR-m1-3p | 8 | ......__ | 3 | 75 |
| VMR_0164 | hbv-miR-b20-3p | 6 | ......__ | 1 | 75 |
| VMR_0163 | hbv-miR-b20-3p | 6 | ......__ | 1 | 75 |
| VMR_0162 | hbv-miR-b20-3p | 7 | ......__ | 2 | 75 |
| VMR_0161 | hbv-miR-b20-3p | 8 | ......__ | 3 | 75 |
| VMR_0160 | hbv-miR-b20-3p | 6 | ......__ | 1 | 75 |
