| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccaggag | 7 | ||
| VMR_1200 | tumv-miR-s21 | 2 | ....... | 8 | 100 |
| VMR_0298 | hsv1-miR-h16 | 1 | ....... | 7 | 100 |
| VMR_1277 | wssv-miR154-5p | 1 | _...... | 6 | 85 |
| VMR_0436 | mcmv-miR-m23-1-3p | 6 | _...... | 1 | 85 |
| VMR_0386 | iltv-miR-i6* | 8 | _...... | 3 | 85 |
| VMR_0306 | hsv1-miR-h3* | 6 | _...... | 1 | 85 |
