| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagggag | 8 | ||
| VMR_0258 | hiv1-miR-h1 | 1 | ........ | 8 | 100 |
| VMR_1293 | wssv-miR36-5p | 2 | ......__ | 7 | 75 |
| VMR_0416 | kshv-miR-k12-8* | 7 | __...... | 2 | 75 |
| VMR_0005 | bfv-miR-bf1-3p | 6 | _......_ | 1 | 75 |
| VMR_0004 | bfv-miR-bf1-3p | 6 | _......_ | 1 | 75 |
| VMR_0003 | bfv-miR-bf1-3p | 6 | _......_ | 1 | 75 |
| VMR_0002 | bfv-miR-bf1-3p | 6 | _......_ | 1 | 75 |
| VMR_0001 | bfv-miR-bf1-3p | 6 | _......_ | 1 | 75 |
