| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagtccc | 8 | ||
| VMR_1023 | rlcv-miR-rl1-29-5p | 1 | ........ | 8 | 100 |
| VMR_1022 | rlcv-miR-rl1-29-5p | 1 | ........ | 8 | 100 |
| VMR_0491 | mdv2-miR-m16 | 3 | ......__ | 8 | 75 |
| VMR_0462 | mdv1-miR-m2-3p | 7 | _......_ | 2 | 75 |
| VMR_0288 | hsv1-miR-69853 | 8 | ......__ | 3 | 75 |
| VMR_0305 | hsv1-miR-h3 | 8 | __...... | 3 | 75 |
| VMR_0093 | dev-miR-d9-3p | 1 | _......_ | 6 | 75 |
