| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccatcccc | 8 | ||
| VMR_0231 | hcmv-miR-ul70-3p | 8 | ........ | 1 | 100 |
| VMR_0074 | dev-miR-d18-3p | 1 | ........ | 8 | 100 |
| VMR_0777 | prv-miR-7-5p | 7 | ......._ | 1 | 87 |
| VMR_0773 | prv-miR-7-5p | 7 | ......._ | 1 | 87 |
| VMR_0769 | prv-miR-7-5p | 7 | ......._ | 1 | 87 |
| VMR_0738 | prv-miR-5-5p | 8 | _....... | 2 | 87 |
| VMR_0727 | prv-miR-5-5p | 8 | _....... | 2 | 87 |
| VMR_0723 | prv-miR-5-5p | 8 | _....... | 2 | 87 |
| VMR_0736 | prv-miR-5-5p | 8 | ......a. | 1 | 87 |
| VMR_0742 | prv-miR-5-5p | 7 | ......__ | 2 | 75 |
| VMR_0737 | prv-miR-5-5p | 6 | ......__ | 1 | 75 |
| VMR_0718 | prv-miR-5-5p | 6 | _......_ | 1 | 75 |
| VMR_0684 | prv-miR-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0682 | prv-miR-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0679 | prv-miR-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0678 | prv-miR-2-5p | 2 | _......_ | 7 | 75 |
| VMR_0677 | prv-miR-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0674 | prv-miR-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0673 | prv-miR-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0670 | prv-miR-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0352 | hvt-miR-h11 | 6 | _......_ | 1 | 75 |
| VMR_0257 | hhv6b-miR-ro6-4* | 7 | ......__ | 2 | 75 |
| VMR_0133 | ebv-miR-bart6-3p | 7 | __...... | 2 | 75 |
| VMR_0046 | blv-miR-b3-5p | 1 | __...... | 6 | 75 |
