| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccatgaat | 8 | ||
| VMR_1221 | tumv-miR-s40 | 1 | ........ | 8 | 100 |
| VMR_0974 | rlcv-miR-rl1-16-3p | 1 | _......_ | 6 | 75 |
| VMR_0715 | prv-miR-5-3p | 6 | __...... | 1 | 75 |
| VMR_0368 | hvt-miR-h3-5p | 8 | ......__ | 3 | 75 |
| VMR_0361 | hvt-miR-h16-5p | 6 | _......_ | 1 | 75 |
| VMR_0117 | ebv-miR-bart20-3p | 1 | _......_ | 6 | 75 |
