| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgtggg | 8 | ||
| VMR_0066 | dev-miR-d13-5p | 1 | ........ | 8 | 100 |
| VMR_0239 | hcmv-miR-us29-3p6 | 7 | _....... | 1 | 87 |
| VMR_0997 | rlcv-miR-rl1-22-5p | 1 | __...... | 6 | 75 |
| VMR_0996 | rlcv-miR-rl1-22-5p | 2 | __...... | 7 | 75 |
| VMR_0995 | rlcv-miR-rl1-22-5p | 1 | __...... | 6 | 75 |
| VMR_0994 | rlcv-miR-rl1-22-5p | 2 | __...... | 7 | 75 |
| VMR_0274 | hsv1-miR-107969 | 7 | ......__ | 2 | 75 |
| VMR_0024 | bhv1-miR-b3 | 6 | _......_ | 1 | 75 |
