| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgttcg | 8 | ||
| VMR_0366 | hvt-miR-h2 | 1 | ........ | 8 | 100 |
| VMR_0537 | mghv-miR-m1-14-5p | 1 | ......._ | 7 | 87 |
| VMR_1168 | sgiv-miR-13 | 6 | _......_ | 1 | 75 |
| VMR_0934 | rcmv-miR-r91-1 | 1 | __...... | 6 | 75 |
| VMR_0423 | mcmv-miR-m01-2* | 1 | __...... | 6 | 75 |
| VMR_0236 | hcmv-miR-us25-1* | 8 | __...... | 3 | 75 |
| VMR_0146 | ebv-miR-bhrf1-3 | 7 | ......__ | 2 | 75 |
