| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccctcccc | 8 | ||
| VMR_0841 | prv-miR-9-3p | 1 | ........ | 8 | 100 |
| VMR_0838 | prv-miR-9-3p | 1 | ........ | 8 | 100 |
| VMR_0835 | prv-miR-9-3p | 1 | ........ | 8 | 100 |
| VMR_0833 | prv-miR-9-3p | 1 | ........ | 8 | 100 |
| VMR_1122 | rrv-miR-rr1-4-5p | 8 | _....... | 2 | 87 |
| VMR_1119 | rrv-miR-rr1-4-5p | 8 | _....... | 2 | 87 |
| VMR_1113 | rrv-miR-rr1-4 | 8 | _....... | 2 | 87 |
| VMR_0842 | prv-miR-9-3p | 1 | _....... | 7 | 87 |
| VMR_0839 | prv-miR-9-3p | 1 | _....... | 7 | 87 |
| VMR_0836 | prv-miR-9-3p | 1 | _....... | 7 | 87 |
| VMR_0834 | prv-miR-9-3p | 1 | _....... | 7 | 87 |
| VMR_0832 | prv-miR-9-3p | 1 | _....... | 7 | 87 |
| VMR_0641 | prv-miR-11-1 | 6 | _......_ | 1 | 75 |
| VMR_0843 | prv-miR-9-3p | 1 | __...... | 6 | 75 |
| VMR_0840 | prv-miR-9-3p | 1 | __...... | 6 | 75 |
| VMR_0837 | prv-miR-9-3p | 1 | __...... | 6 | 75 |
| VMR_0399 | kshv-miR-k12-12 | 8 | __...... | 3 | 75 |
| VMR_0249 | hcv-miR-199a* | 1 | __...... | 6 | 75 |
| VMR_0178 | hbv-miR-b22-3p | 8 | __...... | 3 | 75 |
| VMR_0177 | hbv-miR-b22-3p | 8 | __...... | 3 | 75 |
| VMR_0153 | hbv-miR-b14rc-3p | 6 | ......__ | 1 | 75 |
| VMR_0152 | hbv-miR-b14rc-3p | 7 | ......__ | 2 | 75 |
| VMR_0151 | hbv-miR-b14rc-3p | 6 | ......__ | 1 | 75 |
| VMR_0150 | hbv-miR-b14rc-3p | 7 | ......__ | 2 | 75 |
| VMR_0149 | hbv-miR-b14rc-3p | 7 | ......__ | 2 | 75 |
| VMR_0092 | dev-miR-d8-5p | 3 | _......_ | 8 | 75 |
| VMR_0054 | blv-miR-b5-5p | 7 | ......__ | 2 | 75 |
