| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgaacg | 7 | ||
| VMR_0236 | hcmv-miR-us25-1* | 2 | ....... | 8 | 100 |
| VMR_0934 | rcmv-miR-r91-1 | 6 | _...... | 1 | 85 |
| VMR_0423 | mcmv-miR-m01-2* | 6 | _...... | 1 | 85 |
| VMR_0366 | hvt-miR-h2 | 8 | _...... | 3 | 85 |
