| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgcgct | 7 | ||
| VMR_0349 | hvsa-miR-hsur5-5p | 2 | ....... | 8 | 100 |
| VMR_0332 | hsv2-miR-h25 | 8 | ......_ | 3 | 85 |
| VMR_0271 | hsv1-miR-105617b | 8 | _...... | 3 | 85 |
