| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccggaac | 7 | ||
| VMR_1128 | rrv-miR-rr1-5-5p | 2 | ....... | 8 | 100 |
| VMR_1127 | rrv-miR-rr1-5-5p | 2 | ....... | 8 | 100 |
| VMR_1126 | rrv-miR-rr1-5-5p | 2 | ....... | 8 | 100 |
| VMR_1123 | rrv-miR-rr1-5 | 1 | ....... | 7 | 100 |
| VMR_0949 | rhcmv-miR-rh225 | 2 | ....... | 8 | 100 |
| VMR_0625 | prv-miR-11-1 | 6 | _...... | 1 | 85 |
| VMR_0359 | hvt-miR-h15* | 2 | _...... | 7 | 85 |
| VMR_0281 | hsv1-miR-40262b | 8 | ......_ | 3 | 85 |
