| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgggaac | 8 | ||
| VMR_0181 | hbv-miR-b2-3p | 1 | ........ | 8 | 100 |
| VMR_0180 | hbv-miR-b2-3p | 1 | _....... | 7 | 87 |
| VMR_1214 | tumv-miR-s34 | 2 | _......_ | 7 | 75 |
| VMR_1079 | rrv-miR-rr1-12-5p | 3 | __...... | 8 | 75 |
| VMR_1078 | rrv-miR-rr1-12-5p | 3 | __...... | 8 | 75 |
| VMR_1077 | rrv-miR-rr1-12-5p | 3 | __...... | 8 | 75 |
| VMR_0716 | prv-miR-5-3p | 8 | __...... | 3 | 75 |
