| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgtgctt | 8 | ||
| VMR_0334 | hsv2-miR-h4-3p | 1 | ........ | 8 | 100 |
| VMR_1240 | tumv-miR-s58 | 8 | __...... | 3 | 75 |
| VMR_0899 | rcmv-miR-r111.2-1 | 3 | _......_ | 8 | 75 |
| VMR_0898 | rcmv-miR-r111.2-1 | 3 | _......_ | 8 | 75 |
| VMR_0717 | prv-miR-5-5p | 2 | ......__ | 7 | 75 |
| VMR_0565 | ohv2-miR-17-21 | 6 | __...... | 1 | 75 |
| VMR_0161 | hbv-miR-b20-3p | 1 | _......_ | 6 | 75 |
