| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cctggacc | 8 | ||
| VMR_0136 | ebv-miR-bart7* | 1 | ........ | 8 | 100 |
| VMR_1293 | wssv-miR36-5p | 6 | ......__ | 1 | 75 |
| VMR_0228 | hcmv-miR-ul36* | 8 | ......__ | 3 | 75 |
| VMR_0140 | ebv-miR-bart9* | 3 | _......_ | 8 | 75 |
| VMR_0093 | dev-miR-d9-3p | 8 | _......_ | 3 | 75 |
