| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cctttgt | 7 | ||
| VMR_0938 | rhcmv-miR-rh04 | 2 | ....... | 8 | 100 |
| VMR_0513 | mdv2-miR-m26 | 2 | ....... | 8 | 100 |
| VMR_1261 | tumv-miR-s77 | 1 | _...... | 6 | 85 |
| VMR_0121 | ebv-miR-bart22 | 8 | _...... | 3 | 85 |
