| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgagcact | 8 | ||
| VMR_0588 | ohv2-miR-8 | 1 | ........ | 8 | 100 |
| VMR_0279 | hsv1-miR-34208b | 8 | _....... | 2 | 87 |
| VMR_1243 | tumv-miR-s60 | 8 | .c...... | 1 | 87 |
| VMR_1148 | rrv-miR-rr1-8-3p | 8 | __...... | 3 | 75 |
| VMR_1147 | rrv-miR-rr1-8-3p | 8 | __...... | 3 | 75 |
| VMR_1146 | rrv-miR-rr1-8-3p | 8 | __...... | 3 | 75 |
| VMR_0952 | rhcmv-miR-rh96-1 | 8 | __...... | 3 | 75 |
| VMR_0551 | mghv-miR-m1-8 | 1 | __...... | 6 | 75 |
| VMR_0502 | mdv2-miR-m21 | 1 | _......_ | 6 | 75 |
| VMR_0428 | mcmv-miR-m107-1-3p | 6 | ......__ | 1 | 75 |
