| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgcaccac | 8 | ||
| VMR_1055 | rlcv-miR-rl1-5-3p | 1 | ........ | 8 | 100 |
| VMR_0126 | ebv-miR-bart3-3p | 1 | ........ | 8 | 100 |
| VMR_0124 | ebv-miR-bart3 | 1 | ........ | 8 | 100 |
| VMR_0420 | kun-miR-1 | 7 | ......._ | 1 | 87 |
| VMR_1241 | tumv-miR-s59 | 7 | __...... | 2 | 75 |
| VMR_1187 | tumv-miR-s1 | 2 | _......_ | 7 | 75 |
| VMR_1053 | rlcv-miR-rl1-4-3p | 1 | __...... | 6 | 75 |
| VMR_1024 | rlcv-miR-rl1-3 | 2 | ......__ | 7 | 75 |
| VMR_0986 | rlcv-miR-rl1-19-3p | 3 | __...... | 8 | 75 |
| VMR_0985 | rlcv-miR-rl1-19-3p | 3 | __...... | 8 | 75 |
| VMR_0892 | rcmv-miR-r111.1-1 | 1 | ......__ | 6 | 75 |
| VMR_0891 | rcmv-miR-r111.1-1 | 1 | ......__ | 6 | 75 |
| VMR_0889 | rcmv-miR-r111.1-1 | 1 | ......__ | 6 | 75 |
| VMR_0502 | mdv2-miR-m21 | 3 | _......_ | 8 | 75 |
| VMR_0371 | hvt-miR-h5 | 8 | _......_ | 3 | 75 |
| VMR_0319 | hsv2-miR-h10 | 7 | ......__ | 2 | 75 |
| VMR_0049 | blv-miR-b4-3p | 3 | _......_ | 8 | 75 |
| VMR_0047 | blv-miR-b4 | 3 | _......_ | 8 | 75 |
| VMR_0050 | blv-miR-b4-3p | 3 | _......_ | 8 | 75 |
| VMR_0048 | blv-miR-b4-3p | 3 | _......_ | 8 | 75 |
