| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgcacgtc | 8 | ||
| VMR_1139 | rrv-miR-rr1-7-3p | 1 | ........ | 8 | 100 |
| VMR_1138 | rrv-miR-rr1-7-3p | 1 | ........ | 8 | 100 |
| VMR_1137 | rrv-miR-rr1-7-3p | 1 | ........ | 8 | 100 |
| VMR_1136 | rrv-miR-rr1-7-3p | 1 | ........ | 8 | 100 |
| VMR_1208 | tumv-miR-s29 | 3 | ......__ | 8 | 75 |
| VMR_1173 | sgiv-miR-3 | 8 | _......_ | 3 | 75 |
| VMR_0899 | rcmv-miR-r111.2-1 | 7 | _......_ | 2 | 75 |
| VMR_0898 | rcmv-miR-r111.2-1 | 7 | _......_ | 2 | 75 |
| VMR_0717 | prv-miR-5-5p | 8 | ......__ | 3 | 75 |
| VMR_0523 | mdv2-miR-m30* | 8 | __...... | 3 | 75 |
| VMR_0363 | hvt-miR-h17* | 3 | __...... | 8 | 75 |
| VMR_0302 | hsv1-miR-h2* | 2 | ......__ | 7 | 75 |
