| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgctttcg | 8 | ||
| VMR_0246 | hcmv-miR-us5-1-5p | 1 | ........ | 8 | 100 |
| VMR_1199 | tumv-miR-s20 | 7 | _....... | 1 | 87 |
| VMR_0248 | hcmv-miR-us5-2-5p6 | 1 | __...... | 6 | 75 |
| VMR_0057 | bmnpv-miR-3 | 6 | _......_ | 1 | 75 |
