| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggatgga | 8 | ||
| VMR_0257 | hhv6b-miR-ro6-4* | 1 | ........ | 8 | 100 |
| VMR_0742 | prv-miR-5-5p | 2 | _....... | 8 | 87 |
| VMR_0737 | prv-miR-5-5p | 1 | _....... | 7 | 87 |
| VMR_1248 | tumv-miR-s65 | 7 | __...... | 2 | 75 |
| VMR_1222 | tumv-miR-s41 | 3 | ......__ | 8 | 75 |
| VMR_1206 | tumv-miR-s27 | 2 | __...... | 7 | 75 |
| VMR_1190 | tumv-miR-s12 | 2 | __...... | 7 | 75 |
| VMR_0977 | rlcv-miR-rl1-17-5p | 2 | __...... | 7 | 75 |
| VMR_0978 | rlcv-miR-rl1-17-5p | 2 | __...... | 7 | 75 |
| VMR_0777 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0773 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0769 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0736 | prv-miR-5-5p | 3 | _......_ | 8 | 75 |
| VMR_0525 | mdv2-miR-m32* | 8 | __...... | 3 | 75 |
| VMR_0490 | mdv2-miR-m15* | 1 | __...... | 6 | 75 |
| VMR_0290 | hsv1-miR-h1 | 1 | __...... | 6 | 75 |
| VMR_0231 | hcmv-miR-ul70-3p | 3 | _......_ | 8 | 75 |
| VMR_0074 | dev-miR-d18-3p | 6 | _......_ | 1 | 75 |
