| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggggcaa | 8 | ||
| VMR_0669 | prv-miR-2-3p | 1 | ........ | 8 | 100 |
| VMR_0668 | prv-miR-2-3p | 3 | ......__ | 8 | 75 |
| VMR_0667 | prv-miR-2-3p | 3 | ......__ | 8 | 75 |
| VMR_0666 | prv-miR-2-3p | 3 | ......__ | 8 | 75 |
| VMR_0665 | prv-miR-2-3p | 3 | ......__ | 8 | 75 |
| VMR_0593 | prv-miR-10-1 | 7 | _......_ | 2 | 75 |
| VMR_0498 | mdv2-miR-m19-3p | 8 | _......_ | 3 | 75 |
| VMR_0297 | hsv1-miR-h15 | 7 | ......__ | 2 | 75 |
| VMR_0189 | hbv-miR-b4 | 2 | ......__ | 7 | 75 |
