Result for your query miRNA sequence
>rrv-miR-rr1-9-3p
cggucau

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cggtcat7
VMR_1156 rrv-miR-rr1-9-3p 2.......8100
VMR_1155 rrv-miR-rr1-9-3p 1.......7100
VMR_1154 rrv-miR-rr1-9-3p 2.......8100
VMR_1153 rrv-miR-rr1-9-3p 2.......8100
VMR_1152 rrv-miR-rr1-9-3p 2.......8100
VMR_0446 mcmv-miR-m88-1* 7.......1100
VMR_1101 rrv-miR-rr1-15-5p 2......_785
VMR_1100 rrv-miR-rr1-15-5p 3......_885
VMR_1099 rrv-miR-rr1-15-5p 3......_885
VMR_1098 rrv-miR-rr1-15-5p 3......_885
VMR_1097 rrv-miR-rr1-15-5p 3......_885
VMR_1157 rrv-miR-rr1-9-3p 3......_885
VMR_0948 rhcmv-miR-rh183-2 3......_885
VMR_0432 mcmv-miR-m108-2-5p.1 2......_785
VMR_0429 mcmv-miR-m107-1-5p 1......_685