| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggtgggg | 8 | ||
| VMR_0808 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_1090 | rrv-miR-rr1-1-3p | 8 | ......__ | 3 | 75 |
| VMR_1089 | rrv-miR-rr1-1-3p | 7 | ......__ | 2 | 75 |
| VMR_1067 | rrv-miR-rr1-1* | 8 | ......__ | 3 | 75 |
| VMR_0997 | rlcv-miR-rl1-22-5p | 2 | __...... | 7 | 75 |
| VMR_0996 | rlcv-miR-rl1-22-5p | 3 | __...... | 8 | 75 |
| VMR_0995 | rlcv-miR-rl1-22-5p | 2 | __...... | 7 | 75 |
| VMR_0994 | rlcv-miR-rl1-22-5p | 3 | __...... | 8 | 75 |
| VMR_0972 | rlcv-miR-rl1-15-5p | 7 | _......_ | 2 | 75 |
| VMR_0971 | rlcv-miR-rl1-15-5p | 7 | _......_ | 2 | 75 |
| VMR_1063 | rlcv-miR-rl1-8-3p | 1 | _......_ | 6 | 75 |
| VMR_1062 | rlcv-miR-rl1-8-3p | 1 | _......_ | 6 | 75 |
| VMR_0818 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0816 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0812 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0809 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0803 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0799 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0797 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0620 | prv-miR-11-1 | 1 | __...... | 6 | 75 |
| VMR_0611 | prv-miR-11-1 | 1 | __...... | 6 | 75 |
| VMR_0758 | prv-miR-7-3p | 7 | ......__ | 2 | 75 |
| VMR_0757 | prv-miR-7-3p | 7 | ......__ | 2 | 75 |
| VMR_0756 | prv-miR-7-3p | 7 | ......__ | 2 | 75 |
| VMR_0754 | prv-miR-7-3p | 7 | ......__ | 2 | 75 |
| VMR_0341 | hsv2-miR-h9-3p | 8 | _......_ | 3 | 75 |
| VMR_0158 | hbv-miR-b19-5p | 1 | _......_ | 6 | 75 |
