| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgtcctc | 7 | ||
| VMR_0224 | hcmv-miR-ul148d | 2 | ....... | 8 | 100 |
| VMR_0664 | prv-miR-2-3p | 8 | _...... | 3 | 85 |
| VMR_0322 | hsv2-miR-h12 | 8 | ......_ | 3 | 85 |
