| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgtgctgg | 8 | ||
| VMR_0161 | hbv-miR-b20-3p | 1 | ........ | 8 | 100 |
| VMR_1243 | tumv-miR-s60 | 2 | _....... | 8 | 87 |
| VMR_0449 | mcv-miR-m1-3p | 2 | _....... | 8 | 87 |
| VMR_0162 | hbv-miR-b20-3p | 1 | _....... | 7 | 87 |
| VMR_0899 | rcmv-miR-r111.2-1 | 3 | ......__ | 8 | 75 |
| VMR_0898 | rcmv-miR-r111.2-1 | 3 | ......__ | 8 | 75 |
| VMR_0411 | kshv-miR-k12-6-5p | 6 | __...... | 1 | 75 |
| VMR_0393 | kshv-miR-k12-1* | 7 | _......_ | 2 | 75 |
| VMR_0334 | hsv2-miR-h4-3p | 2 | ......__ | 7 | 75 |
| VMR_0164 | hbv-miR-b20-3p | 1 | __...... | 6 | 75 |
| VMR_0163 | hbv-miR-b20-3p | 1 | __...... | 6 | 75 |
| VMR_0160 | hbv-miR-b20-3p | 1 | __...... | 6 | 75 |
