| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgtgggg | 7 | ||
| VMR_0997 | rlcv-miR-rl1-22-5p | 1 | ....... | 7 | 100 |
| VMR_0996 | rlcv-miR-rl1-22-5p | 2 | ....... | 8 | 100 |
| VMR_0995 | rlcv-miR-rl1-22-5p | 1 | ....... | 7 | 100 |
| VMR_0994 | rlcv-miR-rl1-22-5p | 2 | ....... | 8 | 100 |
| VMR_0818 | prv-miR-8-5p | 1 | _...... | 6 | 85 |
| VMR_0816 | prv-miR-8-5p | 1 | _...... | 6 | 85 |
| VMR_0812 | prv-miR-8-5p | 1 | _...... | 6 | 85 |
| VMR_0809 | prv-miR-8-5p | 1 | _...... | 6 | 85 |
| VMR_0808 | prv-miR-8-5p | 3 | _...... | 8 | 85 |
| VMR_0803 | prv-miR-8-5p | 1 | _...... | 6 | 85 |
| VMR_0799 | prv-miR-8-5p | 1 | _...... | 6 | 85 |
| VMR_0797 | prv-miR-8-5p | 1 | _...... | 6 | 85 |
| VMR_0620 | prv-miR-11-1 | 1 | _...... | 6 | 85 |
| VMR_0611 | prv-miR-11-1 | 1 | _...... | 6 | 85 |
| VMR_0239 | hcmv-miR-us29-3p6 | 6 | ......_ | 1 | 85 |
| VMR_0066 | dev-miR-d13-5p | 3 | ......_ | 8 | 85 |
