| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctaaacac | 8 | ||
| VMR_1112 | rrv-miR-rr1-3-5p | 8 | ........ | 1 | 100 |
| VMR_1111 | rrv-miR-rr1-3-5p | 8 | ........ | 1 | 100 |
| VMR_0071 | dev-miR-d16-3p | 1 | ........ | 8 | 100 |
| VMR_0489 | mdv2-miR-m15 | 7 | __...... | 2 | 75 |
| VMR_0407 | kshv-miR-k12-4-5p | 3 | ......__ | 8 | 75 |
| VMR_0362 | hvt-miR-h17 | 1 | _......_ | 6 | 75 |
