| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctaggccg | 8 | ||
| VMR_1164 | sfv4-miRT124 | 1 | ........ | 8 | 100 |
| VMR_0953 | rhcmv-miR-rh96-2 | 2 | __...... | 7 | 75 |
| VMR_0946 | rhcmv-miR-rh176 | 1 | _......_ | 6 | 75 |
| VMR_0415 | kshv-miR-k12-8 | 1 | ......__ | 6 | 75 |
| VMR_0329 | hsv2-miR-h23 | 1 | __...... | 6 | 75 |
| VMR_0034 | bhv5-miR-B12 | 2 | __...... | 7 | 75 |
