| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctaggcgc | 8 | ||
| VMR_0415 | kshv-miR-k12-8 | 1 | ........ | 8 | 100 |
| VMR_0275 | hsv1-miR-114783 | 1 | .g...... | 8 | 87 |
| VMR_1171 | sgiv-miR-1-5p | 2 | _......_ | 7 | 75 |
| VMR_1164 | sfv4-miRT124 | 1 | ......__ | 6 | 75 |
| VMR_1029 | rlcv-miR-rl1-31-3p | 1 | _......_ | 6 | 75 |
| VMR_0586 | ohv2-miR-7 | 3 | __...... | 8 | 75 |
