| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctcagtat | 8 | ||
| VMR_1304 | wssv-miR82 | 1 | ........ | 8 | 100 |
| VMR_0061 | bpcv2-miR-b1 | 7 | __...... | 2 | 75 |
| VMR_0060 | bpcv1-miR-b1 | 7 | __...... | 2 | 75 |
| VMR_0020 | bfv-miR-bf2-5p | 1 | _......_ | 6 | 75 |
| VMR_0019 | bfv-miR-bf2-5p | 1 | _......_ | 6 | 75 |
| VMR_0018 | bfv-miR-bf2-5p | 1 | _......_ | 6 | 75 |
| VMR_0017 | bfv-miR-bf2-5p | 1 | _......_ | 6 | 75 |
| VMR_0016 | bfv-miR-bf2-5p | 1 | _......_ | 6 | 75 |
