| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctccctc | 7 | ||
| VMR_0416 | kshv-miR-k12-8* | 2 | ....... | 8 | 100 |
| VMR_0753 | prv-miR-7-3p | 3 | _...... | 8 | 85 |
| VMR_0258 | hiv1-miR-h1 | 8 | ......_ | 3 | 85 |
