| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctccgga | 7 | ||
| VMR_0223 | hcmv-miR-ul112-5p6 | 2 | ....... | 8 | 100 |
| VMR_0223 | hcmv-miR-ul112-5p6 | 8 | _...... | 3 | 85 |
| VMR_0968 | rlcv-miR-rl1-1-3p | 1 | ......_ | 6 | 85 |
| VMR_0967 | rlcv-miR-rl1-1-3p | 1 | ......_ | 6 | 85 |
| VMR_0966 | rlcv-miR-rl1-1-3p | 1 | ......_ | 6 | 85 |
| VMR_0949 | rhcmv-miR-rh225 | 6 | _...... | 1 | 85 |
| VMR_0949 | rhcmv-miR-rh225 | 1 | _...... | 6 | 85 |
| VMR_0878 | rcmv-miR-orilyt-1 | 7 | ......_ | 2 | 85 |
| VMR_0331 | hsv2-miR-h24 | 1 | ......_ | 6 | 85 |
