| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctccgggc | 8 | ||
| VMR_0968 | rlcv-miR-rl1-1-3p | 1 | ........ | 8 | 100 |
| VMR_0967 | rlcv-miR-rl1-1-3p | 1 | ........ | 8 | 100 |
| VMR_0966 | rlcv-miR-rl1-1-3p | 1 | ........ | 8 | 100 |
| VMR_0878 | rcmv-miR-orilyt-1 | 7 | ......._ | 1 | 87 |
| VMR_1128 | rrv-miR-rr1-5-5p | 6 | _......_ | 1 | 75 |
| VMR_1127 | rrv-miR-rr1-5-5p | 6 | _......_ | 1 | 75 |
| VMR_1126 | rrv-miR-rr1-5-5p | 6 | _......_ | 1 | 75 |
| VMR_0331 | hsv2-miR-h24 | 1 | ......__ | 6 | 75 |
| VMR_0223 | hcmv-miR-ul112-5p6 | 2 | ......__ | 7 | 75 |
