| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctccttc | 7 | ||
| VMR_0512 | mdv2-miR-m25-5p | 2 | ....... | 8 | 100 |
| VMR_1281 | wssv-miR164 | 3 | _...... | 8 | 85 |
| VMR_1165 | sgiv-miR-10 | 6 | _...... | 1 | 85 |
| VMR_0503 | mdv2-miR-m21* | 3 | ......_ | 8 | 85 |
| VMR_0494 | mdv2-miR-m17* | 3 | _...... | 8 | 85 |
| VMR_0351 | hvt-miR-h10 | 1 | _...... | 6 | 85 |
| VMR_0122 | ebv-miR-bart2-3p | 6 | ......_ | 1 | 85 |
