| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctcggagg | 8 | ||
| VMR_0342 | hsv2-miR-h9-5p | 1 | ........ | 8 | 100 |
| VMR_0026 | bhv1-miR-b5 | 1 | ........ | 8 | 100 |
| VMR_0009 | bfv-miR-bf1-5p | 2 | _....... | 8 | 87 |
| VMR_0008 | bfv-miR-bf1-5p | 2 | _....... | 8 | 87 |
| VMR_0007 | bfv-miR-bf1-5p | 2 | _....... | 8 | 87 |
| VMR_0006 | bfv-miR-bf1-5p | 2 | _....... | 8 | 87 |
| VMR_1004 | rlcv-miR-rl1-24-3p | 3 | _......_ | 8 | 75 |
| VMR_0936 | rcmv-miR-r91-1 | 3 | ......__ | 8 | 75 |
| VMR_0369 | hvt-miR-h4 | 3 | __...... | 8 | 75 |
| VMR_0223 | hcmv-miR-ul112-5p6 | 6 | __...... | 1 | 75 |
